Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs8040152 chr15:83356728 C/T 4.1E-7 493 31.18 30.33 29.08 KM Plot
PRAD rs8054222 chr16:3413477 C/T 0.000102 494 28.87 35.47 26.27 KM Plot
PRAD rs8064344 chr17:76876974 C/T 2.74E-8 486 23.2 32.92 30.77 KM Plot
PRAD rs8065599 chr17:76877073 T/C 2.74E-8 486 23.2 32.92 30.77 KM Plot
PRAD rs8071084 chr17:79634162 T/G 4.36E-5 488 30.78 31.37 25.67 KM Plot
PRAD rs8088602 chr18:72789420 A/C 2.76E-5 494 31.23 30.2 13.47 KM Plot
PRAD rs810027 chr1:93852395 A/G 3.53E-6 494 31.3 28.67 18.97 KM Plot
PRAD rs8117291 chr20:61680815 G/A 7.13E-6 490 31.07 30.78 24.15 KM Plot
PRAD rs812666 chr4:185197061 A/G 0.00019 494 30.85 31.37 28.07 KM Plot
PRAD rs8135939 chr22:18434284 A/G 6.96E-6 484 29.17 32.98 26.37 KM Plot
PRAD rs8142673 chr22:42596253 A/C 2.93E-11 494 11.13 24.55 31.38 KM Plot
PRAD rs814421 chr8:9940481 A/C 0.00017 494 22.67 31.27 31.32 KM Plot
PRAD rs814427 chr8:9947323 G/C 3.3E-5 490 19.3 30.97 31.87 KM Plot
PRAD rs831745 chr1:201130286 T/A 6.28E-9 491 43.53 30.8 30.77 KM Plot
PRAD rs831746 chr1:201130814 A/C 8.72E-8 494 43.53 30.8 30.78 KM Plot